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A promoter-level mammalian expression atlas | Nature
A promoter-level mammalian expression atlas | Nature

Influence of Rotational Nucleosome Positioning on Transcription Start Site  Selection in Animal Promoters | PLOS Computational Biology
Influence of Rotational Nucleosome Positioning on Transcription Start Site Selection in Animal Promoters | PLOS Computational Biology

C1 CAGE detects transcription start sites and enhancer activity at  single-cell resolution | Nature Communications
C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution | Nature Communications

Cap analysis of gene expression reveals alternative promoter usage in a rat  model of hypertension | Life Science Alliance
Cap analysis of gene expression reveals alternative promoter usage in a rat model of hypertension | Life Science Alliance

Promoter width. (a) Schematic representation of promoter width... |  Download Scientific Diagram
Promoter width. (a) Schematic representation of promoter width... | Download Scientific Diagram

Epigenomes | Free Full-Text | Promoter-Adjacent DNA Hypermethylation Can  Downmodulate Gene Expression: TBX15 in the Muscle Lineage
Epigenomes | Free Full-Text | Promoter-Adjacent DNA Hypermethylation Can Downmodulate Gene Expression: TBX15 in the Muscle Lineage

Systematic analysis of transcription start sites in avian development |  PLOS Biology
Systematic analysis of transcription start sites in avian development | PLOS Biology

Comparison between annotated TSS and CAGE. (a) Distance between... |  Download Scientific Diagram
Comparison between annotated TSS and CAGE. (a) Distance between... | Download Scientific Diagram

Examples of CAGE-inferred promoters and their response to TNF- a... |  Download Scientific Diagram
Examples of CAGE-inferred promoters and their response to TNF- a... | Download Scientific Diagram

Solving the transcription start site identification problem with ADAPT-CAGE:  a Machine Learning algorithm for the analysis of CAGE data | Scientific  Reports
Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for the analysis of CAGE data | Scientific Reports

FANTOM - Basic CAGE Technology
FANTOM - Basic CAGE Technology

CAGEr: an R package for CAGE (Cap Analysis of Gene Expression) data  analysis and promoterome mining
CAGEr: an R package for CAGE (Cap Analysis of Gene Expression) data analysis and promoterome mining

Solving the transcription start site identification problem with ADAPT-CAGE:  a Machine Learning algorithm for analysis of CAGE data | bioRxiv
Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for analysis of CAGE data | bioRxiv

Homer Software and Data Download
Homer Software and Data Download

Cap analysis of gene expression (CAGE) sequencing reveals alternative  promoter usage in complex disease | bioRxiv
Cap analysis of gene expression (CAGE) sequencing reveals alternative promoter usage in complex disease | bioRxiv

CAGEr: an R package for CAGE (Cap Analysis of Gene Expression) data  analysis and promoterome mining
CAGEr: an R package for CAGE (Cap Analysis of Gene Expression) data analysis and promoterome mining

Cap analysis of gene expression reveals alternative promoter usage in a rat  model of hypertension | Life Science Alliance
Cap analysis of gene expression reveals alternative promoter usage in a rat model of hypertension | Life Science Alliance

Alternative promoters in CpG depleted regions pervasively account for  epigenetic misregulation of cancer transcriptomes | bioRxiv
Alternative promoters in CpG depleted regions pervasively account for epigenetic misregulation of cancer transcriptomes | bioRxiv

Linking FANTOM5 CAGE peaks to annotations with CAGEscan | Scientific Data
Linking FANTOM5 CAGE peaks to annotations with CAGEscan | Scientific Data

CAGE-seq characterization of alternative promoter usage and full-length...  | Download Scientific Diagram
CAGE-seq characterization of alternative promoter usage and full-length... | Download Scientific Diagram

Frontiers | Characterizing Promoter and Enhancer Sequences by a Deep  Learning Method
Frontiers | Characterizing Promoter and Enhancer Sequences by a Deep Learning Method

EPD The Eukaryotic Promoter Database
EPD The Eukaryotic Promoter Database

CAGE - A highly sensitive and precise means of gene expression analysis.
CAGE - A highly sensitive and precise means of gene expression analysis.

The miR-430 locus with extreme promoter density forms a transcription body  during the minor wave of zygotic genome activation - ScienceDirect
The miR-430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation - ScienceDirect

NET-CAGE characterizes the dynamics and topology of human transcribed  cis-regulatory elements | Nature Genetics
NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements | Nature Genetics

Alternative transcription start sites contribute to acute-stress-induced  transcriptome response in human skeletal muscle | Human Genomics | Full Text
Alternative transcription start sites contribute to acute-stress-induced transcriptome response in human skeletal muscle | Human Genomics | Full Text

Analysis of Enhancer–Promoter Interactions using CAGE and RADICL-Seq  Technologies | SpringerLink
Analysis of Enhancer–Promoter Interactions using CAGE and RADICL-Seq Technologies | SpringerLink

Epigenomes | Free Full-Text | Promoter-Adjacent DNA Hypermethylation Can  Downmodulate Gene Expression: TBX15 in the Muscle Lineage
Epigenomes | Free Full-Text | Promoter-Adjacent DNA Hypermethylation Can Downmodulate Gene Expression: TBX15 in the Muscle Lineage

Promoter sequence and architecture determine expression variability and  confer robustness to genetic variants | bioRxiv
Promoter sequence and architecture determine expression variability and confer robustness to genetic variants | bioRxiv